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    LOC109231271 phospholipase A1-Ibeta2, chloroplastic-like [ Nicotiana attenuata ]

    Gene ID: 109231271, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC109231271
    Gene description
    phospholipase A1-Ibeta2, chloroplastic-like
    Locus tag
    A4A49_25804
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nicotiana attenuata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
    Also known as
    GLA1
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC109231271 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current NIATTr2 (GCF_001879085.1) 8 NC_031996.1 (37398425..37400155)

    Chromosome 8 - NC_031996.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109231854 Neighboring gene uncharacterized LOC109231270 Neighboring gene plasminogen activator inhibitor 1 RNA-binding protein-like Neighboring gene pentatricopeptide repeat-containing protein At4g16835, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_031996.1 Chromosome 8 Reference NIATTr2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nicotiana attenuata SIPK, WIPK, NPR1, and fatty acid-amino acid conjugates participate in the induction of jasmonic acid biosynthesis by affecting early enzymatic steps in the pathway. Kallenbach M, et al. Plant Physiol, 2010 Jan. PMID 19897603, Free PMC Article
    2. Molecular evolution and diversification of the Argonaute family of proteins in plants. Singh RK, et al. BMC Plant Biol, 2015 Jan 28. PMID 25626325, Free PMC Article
    3. Cytokinin levels and signaling respond to wounding and the perception of herbivore elicitors in Nicotiana attenuata. Schäfer M, et al. J Integr Plant Biol, 2015 Feb. PMID 24924599, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipase A1-Ibeta2, chloroplastic-like
    Names
    glycerolipase A1
    phospholipase a1-ibeta2, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nicotiana attenuata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NIATTr2

    Genomic

    1. NC_031996.1 Reference NIATTr2

      Range
      37398425..37400155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019396880.1 → XP_019252425.1  phospholipase A1-Ibeta2, chloroplastic-like

      UniProtKB/TrEMBL
      A0A1J6IX23
    Nucleotide Protein
    Heading Accession and Version

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