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    DHX58 DExH-box helicase 58 [ Coturnix japonica (Japanese quail) ]

    Gene ID: 107325122, updated on 14-Mar-2024

    Summary

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    Gene symbol
    DHX58
    Gene description
    DExH-box helicase 58
    See related
    Ensembl:ENSCJPG00005004851
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coturnix japonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
    Orthologs
    human mouse all
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    Genomic context

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    See DHX58 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Coturnix japonica 2.1 (GCF_001577835.2) 27 NC_029542.1 (4436383..4442275, complement)

    Chromosome 27 - NC_029542.1Genomic Context describing neighboring genes Neighboring gene NFKB inhibitor interacting Ras like 2 Neighboring gene zinc finger protein 385C Neighboring gene chromosome 27 C17orf113 homolog Neighboring gene heat shock protein 30C-like Neighboring gene lysine acetyltransferase 2A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029542.1 Chromosome 27 Reference Coturnix japonica 2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of interferon-beta production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to virus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DHX58

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coturnix japonica 2.1 Primary Assembly

    Genomic

    1. NC_029542.1 Reference Coturnix japonica 2.1 Primary Assembly

      Range
      4436383..4442275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015885641.1 → XP_015741127.1  probable ATP-dependent RNA helicase DHX58

      UniProtKB/TrEMBL
      A0A8C2SWU1, A0A8C2SWU4
      Related
      ENSCJPP00005005000.1, ENSCJPT00005008226.1
      Conserved Domains (5) summary
      COG1111
      Location:2 → 521
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd00046
      Location:18 → 170
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd15806
      Location:552 → 664
      LGP2_C; C-terminal domain of Laboratory of Genetics and Physiology 2 (LGP2), a cytoplasmic viral RNA receptor
      cd12090
      Location:227 → 344
      MDA5_ID; Insert domain of MDA5
      pfam00271
      Location:356 → 472
      Helicase_C; Helicase conserved C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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