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    ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102559434, updated on 10-Oct-2024

    Summary

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    Gene symbol
    ARAP1
    Gene description
    ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
    Locus tag
    Y1Q_0011122
    See related
    EnsemblRapid:ENSAMIG00015015096
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See ARAP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (477991629..478062471)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707426.1 (533153..600280)

    Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene ClpB family mitochondrial disaggregase Neighboring gene StAR related lipid transfer domain containing 10 Neighboring gene phosphodiesterase 2A Neighboring gene autophagy related 16 like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3,4,5-trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081824.1 Reference rAllMis1 Primary Assembly

      Range
      477991629..478062471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059723063.1 → XP_059579046.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1

    2. XM_019481886.2 → XP_019337431.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A151PJ82

    3. XM_019481926.2 → XP_019337471.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A151PJL3
      Related
      ENSAMIP00015019943.1, ENSAMIT00015028309.1

    4. XM_019481957.2 → XP_019337502.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A151PJL6

    5. XM_019482000.2 → XP_019337545.2  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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