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    ybaK Cys-tRNA(Pro) deacylase [ Pseudoalteromonas shioyasakiensis ]

    Gene ID: 29847221, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ybaK
    Gene description
    Cys-tRNA(Pro) deacylase
    Locus tag
    PASHI_RS09975
    Gene type
    protein coding
    Organism
    Pseudoalteromonas shioyasakiensis (strain: JCM 18891, type-material: type strain of Pseudoalteromonas shioyasakiensis)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas
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    Genomic context

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    NZ_LRUE01000015.1Genomic Context describing neighboring genes Neighboring gene MarR family transcriptional regulator Neighboring gene Y-family DNA polymerase Neighboring gene translesion error-prone DNA polymerase V autoproteolytic subunit Neighboring gene hypothetical protein Neighboring gene DUF3302 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_LRUE01000015.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Aminoacyl-tRNA substrate and enzyme backbone atoms contribute to translational quality control by YbaK. Kumar S, et al. J Phys Chem B, 2013 Apr 25. PMID 23185990, Free PMC Article
    2. An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing. Wong FC, et al. J Biol Chem, 2003 Dec 26. PMID 14530268
    3. Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex. An S, et al. J Biol Chem, 2005 Oct 14. PMID 16087664
    4. Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications. Zhang H, et al. Proteins, 2000 Jul 1. PMID 10813833

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    Cys-tRNA(Pro) deacylase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_LRUE01000015.1 Reference assembly

      Range
      172208..172669 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_062565479.1 MULTISPECIES: Cys-tRNA(Pro) deacylase [Pseudoalteromonas]

      UniProtKB/TrEMBL
      A0AAX2U478
      Conserved Domains (1) summary
      cd00002
      Location:1 → 152
      YbaK_deacylase; This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) ...
    Nucleotide Protein
    Heading Accession and Version