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    si:dkey-183c6.9 tripartite motif-containing protein 16 [ Fundulus heteroclitus (mummichog) ]

    Gene ID: 110366804, updated on 14-Dec-2023

    Summary

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    Gene symbol
    si:dkey-183c6.9
    Gene description
    tripartite motif-containing protein 16
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fundulus heteroclitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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    Genomic context

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    See si:dkey-183c6.9 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 14 NC_046374.1 (14817085..14835915, complement)
    101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224604.1 (201235..202720, complement)

    Chromosome 14 - NC_046374.1Genomic Context describing neighboring genes Neighboring gene NEDD8 ubiquitin like modifier Neighboring gene guanosine monophosphate reductase 2 Neighboring gene tripartite motif-containing protein 16 Neighboring gene cell death inducing DFFA like effector b Neighboring gene TERF1 (TRF1)-interacting nuclear factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MU-UCD_Fhet_4.1 Primary Assembly

    Genomic

    1. NC_046374.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

      Range
      14817085..14835915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036146349.1 → XP_036002242.1  tripartite motif-containing protein 16

      Conserved Domains (2) summary
      cd19769
      Location:67 → 103
      Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
      cl00034
      Location:13 → 59
      Bbox_SF; B-box-type zinc finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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