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    socs5 suppressor of cytokine signaling 5 [ Sinocyclocheilus anshuiensis ]

    Gene ID: 107678586, updated on 9-Nov-2023

    Summary

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    Gene symbol
    socs5
    Gene description
    suppressor of cytokine signaling 5
    See related
    Ensembl:ENSSANG00000052429
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sinocyclocheilus anshuiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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    Genomic context

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    See socs5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current SAMN03320099.WGS_v1.1 (GCF_001515605.1) Unplaced Scaffold NW_015557179.1 (2830488..2840013)

    NW_015557179.1Genomic Context describing neighboring genes Neighboring gene endothelial PAS domain protein 1 Neighboring gene protein kinase C epsilon Neighboring gene homeobox protein prophet of Pit-1-like Neighboring gene multiple coagulation factor deficiency 2, ER cargo receptor complex subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015557179.1 Unplaced Scaffold Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol-3-kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of phosphatidylinositol 3-kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    suppressor of cytokine signaling 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sinocyclocheilus anshuiensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Genomic

    1. NW_015557179.1 Reference SAMN03320099.WGS_v1.1 Primary Assembly

      Range
      2830488..2840013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016473912.1 → XP_016329398.1  suppressor of cytokine signaling 5 isoform X1

    2. XM_016473913.1 → XP_016329399.1  suppressor of cytokine signaling 5 isoform X2

      UniProtKB/TrEMBL
      A0A671TFL0
      Related
      ENSSANP00000107330.1, ENSSANT00000113871.1
    Nucleotide Protein
    Heading Accession and Version

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