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    LOC122723148 GDSL esterase/lipase EXL3-like [ Manihot esculenta (cassava) ]

    Gene ID: 122723148, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC122723148
    Gene description
    GDSL esterase/lipase EXL3-like
    Locus tag
    MANES_02G107900v8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manihot esculenta
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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    Genomic context

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    See LOC122723148 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current M.esculenta_v8 (GCF_001659605.2) 2 NC_035162.2 (8391635..8394086)

    Chromosome 2 - NC_035162.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110608553 Neighboring gene GDSL esterase/lipase EXL3-like Neighboring gene protein MID1-COMPLEMENTING ACTIVITY 1 Neighboring gene senescence-specific cysteine protease SAG12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_035162.2 Chromosome 2 Reference M.esculenta_v8 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase EXL3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M.esculenta_v8 Primary Assembly

    Genomic

    1. NC_035162.2 Reference M.esculenta_v8 Primary Assembly

      Range
      8391635..8394086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043954478.1 → XP_043810413.1  GDSL esterase/lipase EXL3-like

      UniProtKB/TrEMBL
      A0A2C9WCT9
      Conserved Domains (1) summary
      cd01837
      Location:31 → 350
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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