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    Armc7 armadillo repeat containing 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 287827, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Armc7provided by RGD
    Official Full Name
    armadillo repeat containing 7provided by RGD
    Primary source
    RGD:1310043
    See related
    EnsemblRapid:ENSRNOG00000042691 AllianceGenome:RGD:1310043
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310043
    Summary
    Orthologous to human ARMC7 (armadillo repeat containing 7). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 33.6), Thymus (RPKM 33.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Armc7 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (101222056..101238598)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (100723080..100739636)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (104036250..104052852)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene tripartite motif protein 80 Neighboring gene solute carrier family 16 member 5 Neighboring gene 5', 3'-nucleotidase, cytosolic Neighboring gene Jupiter microtubule associated homolog 1 Neighboring gene small nucleolar RNA SNORA19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    armadillo repeat-containing protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127522.1 → NP_001120994.1  armadillo repeat-containing protein 7

      See identical proteins and their annotated locations for NP_001120994.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A0A8J8YAR2, B2GUY5, E9PTF4
      Related
      ENSRNOP00000004844.8, ENSRNOT00000004843.8
      Conserved Domains (2) summary
      sd00043
      Location:17 → 43
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:87 → 122
      Arm; Armadillo/beta-catenin-like repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      101222056..101238598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017597160.3 → XP_017452649.1  armadillo repeat-containing protein 7 isoform X4

    2. XM_006247711.5 → XP_006247773.2  armadillo repeat-containing protein 7 isoform X1

    3. XM_017597157.3 → XP_017452646.1  armadillo repeat-containing protein 7 isoform X2

      UniProtKB/TrEMBL
      A6HKN3

    4. XM_017597159.3 → XP_017452648.1  armadillo repeat-containing protein 7 isoform X3

      UniProtKB/TrEMBL
      A6HKN3
    Nucleotide Protein Strain
    Heading Accession and Version

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