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    LOC108450119 AP-4 complex subunit mu [ Gossypium arboreum ]

    Gene ID: 108450119, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC108450119
    Gene description
    AP-4 complex subunit mu
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium arboreum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC108450119 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 5 NC_069074.1 (20186684..20191766)
    100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 10 NC_030673.1 (17969407..17974434)

    Chromosome 5 - NC_069074.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH30-like Neighboring gene beta carbonic anhydrase 5, chloroplastic-like Neighboring gene AT-hook motif nuclear-localized protein 17-like Neighboring gene uncharacterized LOC108450964

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to lysosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-4 complex subunit mu

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2569848v2 Primary Assembly

    Genomic

    1. NC_069074.1 Reference ASM2569848v2 Primary Assembly

      Range
      20186684..20191766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017747596.2 → XP_017603085.1  AP-4 complex subunit mu

      UniProtKB/TrEMBL
      A0A0B0MUY3
      Conserved Domains (2) summary
      cl02092
      Location:65 → 134
      Clat_adaptor_s; Clathrin adaptor complex small chain
      cd09253
      Location:178 → 451
      AP-4_Mu4_Cterm; C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4
    Nucleotide Protein
    Heading Accession and Version

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