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    LOC18603656 phytochrome B [ Theobroma cacao (cacao) ]

    Gene ID: 18603656, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18603656
    Gene description
    phytochrome B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18603656 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 4 NC_030853.1 (31242589..31248693)

    Chromosome 4 - NC_030853.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF12-A Neighboring gene ATP-citrate synthase beta chain protein 2 Neighboring gene uncharacterized LOC18603658 Neighboring gene huntingtin-interacting protein K

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030853.1 Chromosome 4 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphorelay sensor kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detection of visible light IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein-tetrapyrrole linkage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in red, far-red light phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phytochrome B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030853.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      31242589..31248693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007035745.2 → XP_007035807.2  phytochrome B isoform X2

      UniProtKB/TrEMBL
      A0A061EQ17

    2. XM_007035746.2 → XP_007035808.2  phytochrome B isoform X1

      UniProtKB/TrEMBL
      A0A061EWW5
    Nucleotide Protein
    Heading Accession and Version

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