U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ABCD2 ATP binding cassette subfamily D member 2 [ Bos indicus (zebu cattle) ]

    Gene ID: 109559218, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ABCD2
    Gene description
    ATP binding cassette subfamily D member 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos indicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ABCD2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Bos_indicus_1.0 (GCF_000247795.1) 5 NC_032654.1 (44954478..44957450)

    Chromosome 5 - NC_032654.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 13 Neighboring gene regulator of DNA class I crossover intermediates 1 Neighboring gene ATP-binding cassette sub-family D member 2-like Neighboring gene ATP synthase subunit alpha, mitochondrial pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_032654.1 Chromosome 5 Reference Bos_indicus_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables long-chain fatty acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in long-chain fatty acid import into peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peroxisome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very long-chain fatty acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATP-binding cassette sub-family D member 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bos_indicus_1.0 Primary Assembly

    Genomic

    1. NC_032654.1 Reference Bos_indicus_1.0 Primary Assembly

      Range
      44954478..44957450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019960791.1 → XP_019816350.1  ATP-binding cassette sub-family D member 2

      UniProtKB/TrEMBL
      A0A6P5BT16
      Conserved Domains (1) summary
      pfam06472
      Location:79 → 364
      ABC_membrane_2; ABC transporter transmembrane region 2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.