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    LOC109583125 streptavidin-V2-like [ Amphimedon queenslandica ]

    Gene ID: 109583125, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC109583125
    Gene description
    streptavidin-V2-like
    See related
    EnsemblRapid:LOC109583125
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amphimedon queenslandica
    Lineage
    Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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    Genomic context

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    See LOC109583125 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546440.1 (160994..162018)

    NW_003546440.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109583133 Neighboring gene UPF0600 protein C5orf51 homolog Neighboring gene UPF0600 protein C5orf51 homolog Neighboring gene streptavidin-V2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003546440.1 Unplaced Scaffold Reference v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables biotin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC109583125

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0 Primary Assembly

    Genomic

    1. NW_003546440.1 Reference v1.0 Primary Assembly

      Range
      160994..162018
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019998319.1 → XP_019853878.1  uncharacterized protein LOC109583125

      UniProtKB/TrEMBL
      A0A1X7UI60
      Related
      XP_019853878.1, XM_019998319.1
      Conserved Domains (3) summary
      pfam01382
      Location:89 → 205
      Avidin; Avidin family
      cd16251
      Location:5 → 34
      EFh_parvalbumin_like; EF-hand motif [structural motif]
      cl25356
      Location:2 → 63
      EFh_parvalbumin_like; EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family
    Nucleotide Protein
    Heading Accession and Version

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