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    DDX55 DEAD-box helicase 55 [ Bos taurus (domestic cattle) ]

    Gene ID: 508581, updated on 30-Jan-2025

    Summary

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    Official Symbol
    DDX55provided by VGNC
    Official Full Name
    DEAD-box helicase 55provided by VGNC
    Primary source
    VGNC:VGNC:27977
    See related
    BGD:BT11058; EnsemblRapid:ENSBTAG00070011874
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See DDX55 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (52061592..52078893, complement)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIH subunit 3 Neighboring gene eukaryotic translation initiation factor 2B subunit alpha Neighboring gene transmembrane p24 trafficking protein 2 Neighboring gene uncharacterized LOC101901945 Neighboring gene transfer RNA glycine (anticodon CCC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC134525

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX55
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
    DEAD box protein 55
    NP_001039472.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046007.2 → NP_001039472.1  ATP-dependent RNA helicase DDX55

      See identical proteins and their annotated locations for NP_001039472.1

      Status: PROVISIONAL

      Source sequence(s)
      BC111255
      UniProtKB/Swiss-Prot
      Q2NL08
      UniProtKB/TrEMBL
      A0A3Q1LH01
      Related
      ENSBTAP00070015966.1, ENSBTAT00070026812.1
      Conserved Domains (4) summary
      smart00487
      Location:24 → 228
      DEXDc; DEAD-like helicases superfamily
      cd00268
      Location:9 → 224
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam00271
      Location:252 → 363
      Helicase_C; Helicase conserved C-terminal domain
      pfam13959
      Location:403 → 462
      DUF4217; Domain of unknown function (DUF4217)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      52061592..52078893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2NL08.1 GenPept UniProtKB/Swiss-Prot:Q2NL08

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