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    LOC582421 tyrosine-protein phosphatase non-receptor type 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 582421, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC582421
    Gene description
    tyrosine-protein phosphatase non-receptor type 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC582421 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (4831809..4879313, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578103.1 (61218..110606, complement)

    NW_022145614.1Genomic Context describing neighboring genes Neighboring gene phosphoenolpyruvate carboxykinase, cytosolic [GTP] Neighboring gene D(2) dopamine receptor-like Neighboring gene piezo-type mechanosensitive ion channel component 1 Neighboring gene uncharacterized LOC579487

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein phosphatase non-receptor type 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

      Range
      4831809..4879313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_782372.5 → XP_787465.2  tyrosine-protein phosphatase non-receptor type 1 isoform X3

      UniProtKB/TrEMBL
      A0A7M7RH41
      Conserved Domains (1) summary
      cd14545
      Location:46 → 279
      PTPc-N1_2; catalytic domain of tyrosine-protein phosphatase non-receptor type 1 and type 2

    2. XM_011665787.2 → XP_011664089.1  tyrosine-protein phosphatase non-receptor type 1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7LVP2
      Conserved Domains (1) summary
      cd14545
      Location:46 → 279
      PTPc-N1_2; catalytic domain of tyrosine-protein phosphatase non-receptor type 1 and type 2

    3. XM_011665786.2 → XP_011664088.1  tyrosine-protein phosphatase non-receptor type 1 isoform X1

      UniProtKB/TrEMBL
      A0A7M7HGG6
      Conserved Domains (1) summary
      cd14545
      Location:46 → 279
      PTPc-N1_2; catalytic domain of tyrosine-protein phosphatase non-receptor type 1 and type 2
    Nucleotide Protein
    Heading Accession and Version

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