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    CAPS calcyphosine [ Canis lupus familiaris (dog) ]

    Gene ID: 403965, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CAPSprovided by VGNC
    Official Full Name
    calcyphosineprovided by VGNC
    Primary source
    VGNC:VGNC:54265
    See related
    Ensembl:ENSCAFG00845012225
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human all
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    Genomic context

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    See CAPS in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (54827470..54829079, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (53919783..53921392, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (54572907..54574519, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (53893876..53895482, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (54342752..54344350, complement)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene regulatory factor X2 Neighboring gene uncharacterized LOC119864766 Neighboring gene zinc finger protein 18-like Neighboring gene uncharacterized LOC102151740 Neighboring gene RAN binding protein 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A11 Neighboring gene vimentin type intermediate filament associated coiled-coil protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcyphosin
    Names
    TPP
    protein 5
    thyroid protein p24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003282.1 → NP_001003282.1  calcyphosin

      See identical proteins and their annotated locations for NP_001003282.1

      Status: PROVISIONAL

      Source sequence(s)
      X14047
      UniProtKB/Swiss-Prot
      P10463
      UniProtKB/TrEMBL
      A0A8C0KZV0, A0A8I3NMQ2, A0A8P0PJ51
      Related
      ENSCAFP00845017110.1, ENSCAFT00845021759.1
      Conserved Domains (3) summary
      pfam13499
      Location:95 → 167
      EF-hand_7; EF-hand domain pair
      cd15897
      Location:61 → 91
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:45 → 119
      EFh_PEF; The penta-EF hand (PEF) family

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      54827470..54829079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      53893876..53895482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      54342752..54344350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      54572907..54574519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      53919783..53921392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P10463.1 GenPept UniProtKB/Swiss-Prot:P10463

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