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    LOAG_16581 DNA-directed RNA polymerase II subunit RPB9 [ Loa loa (eye worm) ]

    Gene ID: 9938147, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOAG_16581
    Gene description
    DNA-directed RNA polymerase II subunit RPB9
    Locus tag
    LOAG_16581
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Loa loa
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Filarioidea; Onchocercidae; Loa
    Old locus tag
    LOAG_00779
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    Genomic context

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    See LOAG_16581 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    5

    NW_018108188.1Genomic Context describing neighboring genes Neighboring gene roadblock/LC7 domain-containing protein Neighboring gene hypothetical protein Neighboring gene ATP synthase subunit Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018108188.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription-coupled nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II subunit RPB9

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_018108188.1 Reference assembly

      Range
      624853..626686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020449234.1 → XP_020307303.1  DNA-directed RNA polymerase II subunit RPB9 [Loa loa]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1I7VQY5, A0A1S0UM02
      Conserved Domains (2) summary
      smart00661
      Location:11 → 64
      RPOL9; RNA polymerase subunit 9
      cd10508
      Location:70 → 120
      Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
    Nucleotide Protein
    Heading Accession and Version

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