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    LOC109889313 RING finger and SPRY domain-containing protein 1 [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109889313, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC109889313
    Gene description
    RING finger and SPRY domain-containing protein 1
    See related
    Ensembl:ENSOKIG00005000757
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC109889313 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    15
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (26716507..26734118, complement)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (22656084..22673649, complement)

    Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene plasmolipin Neighboring gene ADP-ribosylation factor-like protein 2-binding protein Neighboring gene PSME3-interacting protein-like Neighboring gene copine II Neighboring gene protein NLRC5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING finger and SPRY domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034177.2 Reference Okis_V2 Primary Assembly

      Range
      26716507..26734118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020480659.2 → XP_020336248.1  RING finger and SPRY domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C7C4V5, A0A8C7CMB5
      Related
      ENSOKIP00005001514.1, ENSOKIT00005001605.1
      Conserved Domains (2) summary
      cd12883
      Location:363 → 483
      SPRY_RING; SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain
      cd16566
      Location:529 → 569
      RING-HC_RSPRY1; RING finger, HC subclass, found in RING finger and SPRY domain-containing protein 1 (RSPRY1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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