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    SERPINH1 serpin family H member 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 510850, updated on 22-Dec-2024

    Summary

    Official Symbol
    SERPINH1provided by VGNC
    Official Full Name
    serpin family H member 1provided by VGNC
    Primary source
    VGNC:VGNC:34480
    See related
    BGD:BT18583; Ensembl:ENSBTAG00000001027
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
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    Genomic context

    See SERPINH1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (54738169..54748404)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 35 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 5 Neighboring gene uncharacterized LOC132342344 Neighboring gene uncharacterized LOC101905131 Neighboring gene microtubule associated protein 6

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC127397

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables collagen binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in collagen fibril organization IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in negative regulation of endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    serpin H1
    Names
    collagen-binding protein
    colligin
    serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046063.2NP_001039528.1  serpin H1 precursor

      See identical proteins and their annotated locations for NP_001039528.1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000015
      UniProtKB/Swiss-Prot
      Q2KJH6
      Related
      ENSBTAP00000039506.2, ENSBTAT00000039717.4
      Conserved Domains (1) summary
      cd02046
      Location:36417
      serpinH1_CBP1; serpin family H member 1, collagen-binding protein 1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54738169..54748404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005216248.5XP_005216305.1  serpin H1 isoform X1

      See identical proteins and their annotated locations for XP_005216305.1

      UniProtKB/Swiss-Prot
      Q2KJH6
      Conserved Domains (1) summary
      cd02046
      Location:36417
      serpinH1_CBP1; serpin family H member 1, collagen-binding protein 1
    2. XM_005216247.4XP_005216304.1  serpin H1 isoform X1

      See identical proteins and their annotated locations for XP_005216304.1

      UniProtKB/Swiss-Prot
      Q2KJH6
      Conserved Domains (1) summary
      cd02046
      Location:36417
      serpinH1_CBP1; serpin family H member 1, collagen-binding protein 1