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    LOC112273516 synaptotagmin-2-like [ Physcomitrium patens ]

    Gene ID: 112273516, updated on 20-Sep-2024

    Summary

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    Gene symbol
    LOC112273516
    Gene description
    synaptotagmin-2-like
    Locus tag
    PHYPA_024908
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physcomitrium patens
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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    Genomic context

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    See LOC112273516 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current Phypa V3 (GCF_000002425.4) 20 NC_037272.1 (5267832..5272238, complement)

    Chromosome 20 - NC_037272.1Genomic Context describing neighboring genes Neighboring gene FAM10 family protein At4g22670-like Neighboring gene RHOMBOID-like protein 2 Neighboring gene uncharacterized LOC112273517 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transfer RNA leucine (anticodon AAG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037272.1 Chromosome 20 Reference Phypa V3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary genomics of plant genes encoding N-terminal-TM-C2 domain proteins and the similar FAM62 genes and synaptotagmin genes of metazoans. Craxton M. BMC Genomics, 2007 Jul 31. PMID 17672888, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptotagmin-2-like
    Names
    NTMC2Type1.2
    NTMC2Type1.2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Phypa V3 Primary Assembly

    Genomic

    1. NC_037272.1 Reference Phypa V3 Primary Assembly

      Range
      5267832..5272238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024502409.1 → XP_024358177.1  synaptotagmin-2-like

      UniProtKB/TrEMBL
      A0JJX1
      Conserved Domains (1) summary
      cl27773
      Location:2 → 538
      SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
    Nucleotide Protein
    Heading Accession and Version

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