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    PHF20 PHD finger protein 20 [ Pogona vitticeps (central bearded dragon) ]

    Gene ID: 110073358, updated on 15-Mar-2024

    Summary

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    Gene symbol
    PHF20
    Gene description
    PHD finger protein 20
    See related
    Ensembl:ENSPVIG00000005445
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pogona vitticeps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
    Orthologs
    human mouse all
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    Genomic context

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    See PHF20 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150734.1 (1844352..1907217, complement)

    NW_018150734.1Genomic Context describing neighboring genes Neighboring gene NDRG family member 3 Neighboring gene Src like adaptor 2 Neighboring gene rho GTPase-activating protein 39-like Neighboring gene RNA binding motif protein 39

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018150734.1 Unplaced Scaffold Reference pvi1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference pvi1.1

    Genomic

    1. NW_018150734.1 Reference pvi1.1

      Range
      1844352..1907217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020782426.1 → XP_020638085.1  PHD finger protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A6J0ST65
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      COG5189
      Location:297 → 478
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cl17705
      Location:3 → 68
      MBT; mbt repeat
      cl22851
      Location:643 → 686
      PHD_SF; PHD finger superfamily

    2. XM_020782427.1 → XP_020638086.1  PHD finger protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A6J0SNY0
      Related
      ENSPVIP00000006584.1, ENSPVIT00000008515.1
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      COG5189
      Location:297 → 478
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cl17705
      Location:3 → 68
      MBT; mbt repeat
      cl22851
      Location:643 → 686
      PHD_SF; PHD finger superfamily

    3. XM_020782428.1 → XP_020638087.1  PHD finger protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A6J0SP12
      Conserved Domains (2) summary
      COG5189
      Location:181 → 362
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cl22851
      Location:527 → 570
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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