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    TTHERM_00666790 glycosyl hydrolase family 25 protein [ Tetrahymena thermophila SB210 ]

    Gene ID: 7842516, updated on 28-Dec-2023

    Summary

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    Gene symbol
    TTHERM_00666790
    Gene description
    glycosyl hydrolase family 25 protein
    Locus tag
    TTHERM_00666790
    Gene type
    protein coding
    RNA name
    glycosyl hydrolase family 25 protein
    RefSeq status
    PROVISIONAL
    Organism
    Tetrahymena thermophila SB210 (strain: SB210)
    Lineage
    Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahymenidae; Tetrahymena
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    Genomic context

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    See TTHERM_00666790 in Genome Data Viewer
    Exon count:
    1

    NW_002476350.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative Neighboring gene transmembrane protein, putative Neighboring gene transmembrane protein, putative Neighboring gene transmembrane protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002476350.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysozyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    glycosyl hydrolase family 25 protein
    XP_001020047.1
    • encoded by transcript TTHERM_00666790A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002476350.1 Reference assembly

      Range
      242163..242867 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001020047.1 → XP_001020047.1  glycosyl hydrolase family 25 protein [Tetrahymena thermophila SB210]

      See identical proteins and their annotated locations for XP_001020047.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q23TA4
      Conserved Domains (1) summary
      cd06416
      Location:21 → 215
      GH25_Lys1-like; Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 ...
    Nucleotide Protein
    Heading Accession and Version

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