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    TRIM17 tripartite motif containing 17 [ Odocoileus virginianus (white-tailed deer) ]

    Gene ID: 110137977, updated on 15-Mar-2024

    Summary

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    Gene symbol
    TRIM17
    Gene description
    tripartite motif containing 17
    See related
    EnsemblRapid:ENSOVIG00010016978
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Odocoileus virginianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM17 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018334756.1 (384720..391616, complement)

    NW_018334756.1Genomic Context describing neighboring genes Neighboring gene mannose-P-dolichol utilization defect 1 protein-like Neighboring gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF Neighboring gene uncharacterized LOC110137982 Neighboring gene tripartite motif containing 11 Neighboring gene histone H2A type 3 Neighboring gene H3.4 histone, cluster member

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018334756 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ovir.te_1.0 Primary Assembly

    Genomic

    1. NW_018334756.1 Reference Ovir.te_1.0 Primary Assembly

      Range
      384720..391616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020894706.1 → XP_020750365.1  E3 ubiquitin-protein ligase TRIM17 isoform X2

      UniProtKB/TrEMBL
      A0A6J0XLI4
      Conserved Domains (4) summary
      cd00021
      Location:97 → 135
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15812
      Location:294 → 469
      SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
      cl17238
      Location:13 → 66
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25732
      Location:135 → 266
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_020894704.1 → XP_020750363.1  E3 ubiquitin-protein ligase TRIM17 isoform X1

      UniProtKB/TrEMBL
      A0A6J0XKI9
      Related
      ENSOVIP00010024058.1, ENSOVIT00010027165.1
      Conserved Domains (4) summary
      cd00021
      Location:97 → 135
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15812
      Location:295 → 470
      SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
      cl17238
      Location:13 → 66
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25732
      Location:67 → 316
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_020894705.1 → XP_020750364.1  E3 ubiquitin-protein ligase TRIM17 isoform X1

      UniProtKB/TrEMBL
      A0A6J0XKI9
      Conserved Domains (4) summary
      cd00021
      Location:97 → 135
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15812
      Location:295 → 470
      SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
      cl17238
      Location:13 → 66
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25732
      Location:67 → 316
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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