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    NISCH nischarin [ Phascolarctos cinereus (koala) ]

    Gene ID: 110197503, updated on 15-Mar-2024

    Summary

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    Gene symbol
    NISCH
    Gene description
    nischarin
    See related
    Ensembl:ENSPCIG00000033826
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phascolarctos cinereus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
    Orthologs
    human mouse all
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    Genomic context

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    See NISCH in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344167.1 (827242..873789)

    NW_018344167.1Genomic Context describing neighboring genes Neighboring gene semaphorin 3G Neighboring gene troponin C1, slow skeletal and cardiac type Neighboring gene uncharacterized LOC110197505 Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene Neighboring gene stabilin 1 Neighboring gene 5'-nucleotidase domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018344167 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nischarin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference phaCin_unsw_v4.1 Primary Assembly

    Genomic

    1. NW_018344167.1 Reference phaCin_unsw_v4.1 Primary Assembly

      Range
      827242..873789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020971483.1 → XP_020827142.1  nischarin isoform X9

      UniProtKB/TrEMBL
      A0A6P5IYF0
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_020971480.1 → XP_020827139.1  nischarin isoform X7

      UniProtKB/TrEMBL
      A0A6P5J7V5
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_020971484.1 → XP_020827143.1  nischarin isoform X10

      UniProtKB/TrEMBL
      A0A6P5J1F2
      Related
      ENSPCIP00000024254.2, ENSPCIT00000029903.2
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_020971482.1 → XP_020827141.1  nischarin isoform X8

      UniProtKB/TrEMBL
      A0A6P5J7I3
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_020971478.1 → XP_020827137.1  nischarin isoform X5

      UniProtKB/TrEMBL
      A0A6P5IYE5
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    6. XM_020971477.1 → XP_020827136.1  nischarin isoform X4

      UniProtKB/TrEMBL
      A0A6P5J7H8
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    7. XM_020971479.1 → XP_020827138.1  nischarin isoform X6

      UniProtKB/TrEMBL
      A0A6P5J1E7
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    8. XM_020971475.1 → XP_020827134.1  nischarin isoform X2

      UniProtKB/TrEMBL
      A0A6P5J7V0
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    9. XM_020971476.1 → XP_020827135.1  nischarin isoform X3

      UniProtKB/TrEMBL
      A0A6P5IYG7
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]

    10. XM_020971474.1 → XP_020827133.1  nischarin isoform X1

      UniProtKB/TrEMBL
      A0A6P5J1E3
      Conserved Domains (3) summary
      cd06875
      Location:16 → 131
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:286 → 420
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:291 → 313
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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