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    fbrsl1 fibrosin-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 557358, updated on 2-Nov-2024

    Summary

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    Official Symbol
    fbrsl1provided by ZNC
    Official Full Name
    fibrosin-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070705-487
    See related
    AllianceGenome:ZFIN:ZDB-GENE-070705-487
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-69h6.1
    Summary
    Is expressed in several structures, including Kupffer's vesicle; anterior neural rod; brain; midbrain neural keel; and presumptive diencephalon. Orthologous to human FBRSL1 (fibrosin like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See fbrsl1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (17173745..17753822)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (16805781..17249826)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene uncharacterized LOC137495570 Neighboring gene uncharacterized LOC137495571 Neighboring gene uncharacterized LOC137495572 Neighboring gene uncharacterized LOC137495573 Neighboring gene si:dkey-112e17.1 Neighboring gene uncharacterized LOC137495574 Neighboring gene checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptional Complexity and Distinct Expression Patterns of auts2 Paralogs in Danio rerio. Kondrychyn I, et al. G3 (Bethesda), 2017 Aug 7. PMID 28626003, Free PMC Article
    2. Deconvoluting Wavelengths Leading to Fluorescent Light Induced Inflammation and Cellular Stress in Zebrafish (Danio rerio). Boswell M, et al. Sci Rep, 2020 Feb 24. PMID 32094353, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    fibrosin-1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      17173745..17753822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476418.2 → XP_021332093.1  fibrosin-1-like protein

      UniProtKB/TrEMBL
      A0A8M9PYD7
      Conserved Domains (1) summary
      pfam15336
      Location:614 → 814
      Auts2; Autism susceptibility gene 2 protein
    Nucleotide Protein Strain
    Heading Accession and Version

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