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    PLS1 plastin 1 [ Sus scrofa (pig) ]

    Gene ID: 110256310, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PLS1provided by VGNC
    Official Full Name
    plastin 1provided by VGNC
    Primary source
    VGNC:VGNC:91572
    See related
    Ensembl:ENSSSCG00000011680
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in kidney (RPKM 34.3), mixtures (RPKM 8.2) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See PLS1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (83307692..83434133)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene ATR serine/threonine kinase Neighboring gene uncharacterized LOC110256309 Neighboring gene transient receptor potential cation channel subfamily C member 1 Neighboring gene procollagen C-endopeptidase enhancer 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_010455.5 Chromosome 13 Reference Sscrofa11.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      83307692..83434133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021069572.1 → XP_020925231.1  plastin-1

      UniProtKB/TrEMBL
      A0A287BI79, A0A480K625, A0A4X1T7K7, A0A4X1T842, A0A8D1XIS4
      Conserved Domains (1) summary
      COG5069
      Location:13 → 622
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    2. XM_021069576.1 → XP_020925235.1  plastin-1

      UniProtKB/TrEMBL
      A0A287BI79, A0A480K625, A0A4X1T7K7, A0A4X1T842, A0A8D1XIS4
      Related
      ENSSSCP00000055778.2, ENSSSCT00000052898.2
      Conserved Domains (1) summary
      COG5069
      Location:13 → 622
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    3. XM_021069574.1 → XP_020925233.1  plastin-1

      UniProtKB/TrEMBL
      A0A287BI79, A0A480K625, A0A4X1T7K7, A0A4X1T842, A0A8D1XIS4
      Conserved Domains (1) summary
      COG5069
      Location:13 → 622
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    4. XM_021069573.1 → XP_020925232.1  plastin-1

      UniProtKB/TrEMBL
      A0A287BI79, A0A480K625, A0A4X1T7K7, A0A4X1T842, A0A8D1XIS4
      Related
      ENSSSCP00000045916.2, ENSSSCT00000057689.2
      Conserved Domains (1) summary
      COG5069
      Location:13 → 622
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    5. XM_021069577.1 → XP_020925236.1  plastin-1

      UniProtKB/TrEMBL
      A0A287BI79, A0A480K625, A0A4X1T7K7, A0A4X1T842, A0A8D1XIS4
      Conserved Domains (1) summary
      COG5069
      Location:13 → 622
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version

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