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    ASIP agouti signaling protein [ Pongo pygmaeus (Bornean orangutan) ]

    Gene ID: 129021699, updated on 26-Mar-2024

    Summary

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    Gene symbol
    ASIP
    Gene description
    agouti signaling protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo pygmaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    ASP
    Orthologs
    human mouse all
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    Genomic context

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    See ASIP in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonPyg2-v2.0_pri (GCF_028885625.2) 21 NC_072394.2 (36633097..36699878)
    RS_2023_04 previous assembly NHGRI_mPonPyg2-v1.1-hic.freeze_pri (GCF_028885625.1) 20 NC_072393.1 (36626490..36693237)

    Chromosome 21 - NC_072394.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS5-like Neighboring gene endogenous retrovirus group K member 19 Rec protein-like Neighboring gene exportin-T-like Neighboring gene density-regulated protein-like Neighboring gene adenosylhomocysteinase Neighboring gene cell division control protein 42 homolog Neighboring gene itchy E3 ubiquitin protein ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables melanocortin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables neuropeptide hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hormone-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in melanosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of melanin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agouti-signaling protein
    Names
    Agouti switch protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885625.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

    Genomic

    1. NC_072394.2 Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

      Range
      36633097..36699878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054467504.2 → XP_054323479.1  agouti-signaling protein isoform X2

      UniProtKB/Swiss-Prot
      A1YL65, Q1XGV4

    2. XM_054467505.2 → XP_054323480.1  agouti-signaling protein isoform X2

      UniProtKB/Swiss-Prot
      A1YL65, Q1XGV4

    3. XM_054467503.2 → XP_054323478.1  agouti-signaling protein isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1XGV4.1 GenPept UniProtKB/Swiss-Prot:Q1XGV4

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