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    Knl1 kinetochore scaffold 1 [ Mus caroli (Ryukyu mouse) ]

    Gene ID: 110289886, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Knl1
    Gene description
    kinetochore scaffold 1
    See related
    Ensembl:MGP_CAROLIEiJ_G0024131
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus caroli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    human mouse all
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    Genomic context

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    See Knl1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 2 NC_034571.1 (111873092..111937989)

    Chromosome 2 - NC_034571.1Genomic Context describing neighboring genes Neighboring gene RNA pseudouridine synthase domain containing 2 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene RAD51 recombinase Neighboring gene regulator of microtubule dynamics 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034571.1 Chromosome 2 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in attachment of spindle microtubules to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell division IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kinetochore scaffold 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAROLI_EIJ_v1.1 Primary Assembly

    Genomic

    1. NC_034571.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

      Range
      111873092..111937989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029484719.1 → XP_029340579.1  kinetochore scaffold 1 isoform X1

      UniProtKB/TrEMBL
      A0A6P7RR04
      Related
      MGP_CAROLIEiJ_P0053802, MGP_CAROLIEiJ_T0053802.1
      Conserved Domains (2) summary
      COG1196
      Location:1725 → 1913
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam18210
      Location:2022 → 2119
      Knl1_RWD_C; Knl1 RWD C-terminal domain

    2. XM_021156287.2 → XP_021011946.1  kinetochore scaffold 1 isoform X1

      UniProtKB/TrEMBL
      A0A6P7RR04
      Conserved Domains (2) summary
      COG1196
      Location:1725 → 1913
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam18210
      Location:2022 → 2119
      Knl1_RWD_C; Knl1 RWD C-terminal domain

    3. XM_021156286.2 → XP_021011945.1  kinetochore scaffold 1 isoform X1

      UniProtKB/TrEMBL
      A0A6P7RR04
      Conserved Domains (2) summary
      COG1196
      Location:1725 → 1913
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam18210
      Location:2022 → 2119
      Knl1_RWD_C; Knl1 RWD C-terminal domain

    4. XM_021156288.2 → XP_021011947.1  kinetochore scaffold 1 isoform X2

      UniProtKB/TrEMBL
      A0A6P5PBU8
      Conserved Domains (1) summary
      cl25732
      Location:1725 → 1913
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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