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    Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101720314, updated on 3-Dec-2024

    Summary

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    Gene symbol
    Lsm5
    Gene description
    LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
    See related
    Ensembl:ENSHGLG00000011765
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Lsm5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624896.1 (3079167..3083380)

    NW_004624896.1Genomic Context describing neighboring genes Neighboring gene kelch repeat and BTB domain containing 2 Neighboring gene AVL9 cell migration associated Neighboring gene uncharacterized LOC101720900 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 1 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624896 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm5
    Names
    LSM5 homolog, U6 small nuclear RNA associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624896.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      3079167..3083380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004872209.3 → XP_004872266.1  U6 snRNA-associated Sm-like protein LSm5 isoform X2

      See identical proteins and their annotated locations for XP_004872266.1

      UniProtKB/TrEMBL
      A0A0P6K6S3, G5AZG5
      Related
      ENSHGLP00000016426.1, ENSHGLT00000016595.1
      Conserved Domains (1) summary
      cd01732
      Location:11 → 86
      LSm5; Like-Sm protein 5

    2. XM_021250162.1 → XP_021105821.1  U6 snRNA-associated Sm-like protein LSm5 isoform X1

      UniProtKB/TrEMBL
      A0AAX6S8Q9
      Conserved Domains (1) summary
      cd01732
      Location:107 → 177
      LSm5; Like-Sm protein 5

    3. XM_021250163.1 → XP_021105822.1  U6 snRNA-associated Sm-like protein LSm5 isoform X3

      UniProtKB/TrEMBL
      A0AAX6S726
      Conserved Domains (1) summary
      cd01732
      Location:1 → 57
      LSm5; Like-Sm protein 5
    Nucleotide Protein
    Heading Accession and Version

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