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    LOC4343910 sucrose synthase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343910, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4343910
    Gene description
    sucrose synthase 3-like
    Locus tag
    OSNPB_070616800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RSs3; SUS3; RSUS3; OsSUS3; OsJ_25133
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    Genomic context

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    See LOC4343910 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25655817..25661360)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25429550..25435142)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like Neighboring gene 40S ribosomal protein Sa-2 Neighboring gene uncharacterized LOC107277036 Neighboring gene uncharacterized LOC4343911 Neighboring gene ethylene-responsive transcription factor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. New insight into the catalytic properties of rice sucrose synthase. Huang YC, et al. Plant Mol Biol, 2016 Jan. PMID 26520834
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sucrose synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sucrose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sucrose synthase 3
    Names
    B1056G08.118
    LOC_Os07g42490
    P0552F09.101
    Sucrose-UDP glucosyltransferase 3
    sucrose synthase 3 (Sucrose-UDP glucosyltransferase 3)
    NP_001390086.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403157.1 → NP_001390086.1  sucrose synthase 3

      Status: VALIDATED

      Source sequence(s)
      AK100306, CI522638, CI740610
      UniProtKB/Swiss-Prot
      A0A0P0X8V1, H6TFZ2, Q0D4N1, Q43009, Q8GS23
      UniProtKB/TrEMBL
      A2YNQ2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25655817..25661360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q43009.2 GenPept UniProtKB/Swiss-Prot:Q43009

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