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    I2F54_RS06450 glycoside hydrolase family 28 protein [ Bacteroides clarus ]

    Gene ID: 61677438, updated on 9-Jan-2025

    Summary

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    Gene symbol
    I2F54_RS06450
    Gene description
    glycoside hydrolase family 28 protein
    Locus tag
    I2F54_RS06450
    Gene type
    protein coding
    Organism
    Bacteroides clarus (strain: 1001095IJ_161003_B3, nat-host: Homo sapiens)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
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    Genomic context

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    NZ_JADNLF0100000.1Genomic Context describing neighboring genes Neighboring gene ribose 5-phosphate isomerase B Neighboring gene glycosyl hydrolase 115 family protein Neighboring gene tetratricopeptide repeat protein Neighboring gene ferredoxin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_JADNLF010000004.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Glycoside hydrolases: catalytic base/nucleophile diversity. Vuong TV, et al. Biotechnol Bioeng, 2010 Oct 1. PMID 20552664
    2. Modeling catalytic reaction mechanisms in glycoside hydrolases. Coines J, et al. Curr Opin Chem Biol, 2019 Dec. PMID 31731209
    3. The structural basis for exopolygalacturonase activity in a family 28 glycoside hydrolase. Abbott DW, et al. J Mol Biol, 2007 May 18. PMID 17397864
    4. Hierarchical classification of glycoside hydrolases. Naumoff DG. Biochemistry (Mosc), 2011 Jun. PMID 21639842
    5. Structures and mechanisms of glycosyl hydrolases. Davies G, et al. Structure, 1995 Sep 15. PMID 8535779

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    glycoside hydrolase family 28 protein
    WP_087425749.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_JADNLF010000004.1 Reference assembly

      Range
      182798..184201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_087425749.1 MULTISPECIES: glycoside hydrolase family 28 protein [Bacteroides]

      UniProtKB/TrEMBL
      A0A1Y3YVB6
      Conserved Domains (1) summary
      COG5434
      Location:29 → 371
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version