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    LOC8068706 nudix hydrolase 9 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8068706, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8068706
    Gene description
    nudix hydrolase 9
    Locus tag
    SORBI_3009G020100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8068706 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (1806977..1811461)

    Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPP13 Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene disease resistance protein RPM1 Neighboring gene uncharacterized LOC110430631 Neighboring gene E3 UFM1-protein ligase 1 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GDP-mannose hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nudix hydrolase 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      1806977..1811461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002439131.2 → XP_002439176.1  nudix hydrolase 9

      See identical proteins and their annotated locations for XP_002439176.1

      UniProtKB/TrEMBL
      A0A921U3J2, C5YYY6
      Conserved Domains (1) summary
      cd02883
      Location:138 → 243
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    2. XM_021448470.1 → XP_021304145.1  nudix hydrolase 9

      UniProtKB/TrEMBL
      A0A921U3J2, C5YYY6
      Conserved Domains (1) summary
      cd02883
      Location:138 → 243
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
    Nucleotide Protein
    Heading Accession and Version

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