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    LOC110440809 pendrin-like [ Mizuhopecten yessoensis (Yesso scallop) ]

    Gene ID: 110440809, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC110440809
    Gene description
    pendrin-like
    Locus tag
    KP79_PYT18640
    See related
    EnsemblRapid:LOC110440809
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mizuhopecten yessoensis
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Mizuhopecten
    Also known as
    Prestin
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    Genomic context

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    See LOC110440809 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM211388v2 (GCF_002113885.1) Unplaced Scaffold NW_018404217.1 (206832..222421)

    NW_018404217.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110440778 Neighboring gene Fanconi anemia group E protein-like Neighboring gene patched domain-containing protein 3-like Neighboring gene reducing polyketide synthase PKS1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018404217 Unplaced Scaffold Reference ASM211388v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables bicarbonate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chloride transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxalate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sulfate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pendrin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mizuhopecten yessoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211388v2 Primary Assembly

    Genomic

    1. NW_018404217.1 Reference ASM211388v2 Primary Assembly

      Range
      206832..222421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021483947.1 → XP_021339622.1  pendrin-like isoform X2

      Related
      XP_021339622.1, XM_021483947.1
      Conserved Domains (2) summary
      cd07042
      Location:756 → 830
      STAS_SulP_like_sulfate_transporter; Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function
      cl28030
      Location:91 → 604
      Sulfate_transp; Sulfate permease family

    2. XM_021483942.1 → XP_021339617.1  pendrin-like isoform X1

      UniProtKB/TrEMBL
      A0A210R1I5
      Related
      XP_021339617.1, XM_021483942.1
      Conserved Domains (2) summary
      cd07042
      Location:787 → 861
      STAS_SulP_like_sulfate_transporter; Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function
      cl28030
      Location:122 → 635
      Sulfate_transp; Sulfate permease family
    Nucleotide Protein
    Heading Accession and Version

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