U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    NR1H4 nuclear receptor subfamily 1 group H member 4 [ Lonchura striata (white-rumped munia) ]

    Gene ID: 110483086, updated on 2-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    NR1H4
    Gene description
    nuclear receptor subfamily 1 group H member 4
    Locus tag
    RLOC_00007846
    See related
    Ensembl:ENSLSDG00000000748
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lonchura striata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NR1H4 in Genome Data Viewer
    Location:
    chromosome: 1A
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_09 current lonStrDom2 (GCF_005870125.1) 1A NC_042566.1 (18120386..18156343, complement)

    Chromosome 1A - NC_042566.1Genomic Context describing neighboring genes Neighboring gene GAS2-like protein 3 Neighboring gene growth arrest specific 2 like 3 Neighboring gene solute carrier family 17 member 8 Neighboring gene SCY1 like pseudokinase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_042566.1 Chromosome 1A Reference lonStrDom2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables bile acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in bile acid signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    bile acid receptor
    Names
    Bile acid receptor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference lonStrDom2 Primary Assembly

    Genomic

    1. NC_042566.1 Reference lonStrDom2 Primary Assembly

      Range
      18120386..18156343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021552734.1 → XP_021408409.1  bile acid receptor isoform X2

      UniProtKB/TrEMBL
      A0A218UZS6
      Related
      ENSLSDP00000000941.1, ENSLSDT00000001090.1
      Conserved Domains (2) summary
      cd06936
      Location:248 → 468
      NR_LBD_Fxr; The ligand binding domain of Farnesoid X receptor:a member of the nuclear receptor superfamily of ligand-activated transcription factors
      cd06962
      Location:125 → 208
      NR_DBD_FXR; DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers

    2. XM_021552732.1 → XP_021408407.1  bile acid receptor isoform X1

      UniProtKB/TrEMBL
      A0A218UZS6
      Conserved Domains (2) summary
      cd06936
      Location:252 → 472
      NR_LBD_Fxr; The ligand binding domain of Farnesoid X receptor:a member of the nuclear receptor superfamily of ligand-activated transcription factors
      cd06962
      Location:125 → 212
      NR_DBD_FXR; DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers

    3. XM_021552733.1 → XP_021408408.1  bile acid receptor isoform X1

      UniProtKB/TrEMBL
      A0A218UZS6
      Conserved Domains (2) summary
      cd06936
      Location:252 → 472
      NR_LBD_Fxr; The ligand binding domain of Farnesoid X receptor:a member of the nuclear receptor superfamily of ligand-activated transcription factors
      cd06962
      Location:125 → 212
      NR_DBD_FXR; DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers

    4. XM_031507449.1 → XP_031363309.1  bile acid receptor isoform X3

      UniProtKB/TrEMBL
      A0A218UZS6
      Conserved Domains (2) summary
      cd06936
      Location:218 → 438
      NR_LBD_Fxr; The ligand binding domain of Farnesoid X receptor:a member of the nuclear receptor superfamily of ligand-activated transcription factors
      cd06962
      Location:91 → 178
      NR_DBD_FXR; DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.