U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LHX4 LIM homeobox 4 [ Lonchura striata (white-rumped munia) ]

    Gene ID: 110478990, updated on 2-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LHX4
    Gene description
    LIM homeobox 4
    Locus tag
    RLOC_00013085
    See related
    Ensembl:ENSLSDG00000011188
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lonchura striata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LHX4 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_09 current lonStrDom2 (GCF_005870125.1) 8 NC_042574.1 (3172557..3182631, complement)

    Chromosome 8 - NC_042574.1Genomic Context describing neighboring genes Neighboring gene xenotropic and polytropic retrovirus receptor 1 Neighboring gene uncharacterized LOC110478959 Neighboring gene acyl-CoA binding domain containing 6 Neighboring gene quiescin sulfhydryl oxidase 1 Neighboring gene centrosomal protein 350 Neighboring gene torsin-1A-interacting protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_042574.1 Chromosome 8 Reference lonStrDom2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LIM/homeobox protein Lhx4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference lonStrDom2 Primary Assembly

    Genomic

    1. NC_042574.1 Reference lonStrDom2 Primary Assembly

      Range
      3172557..3182631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021545993.1 → XP_021401668.1  LIM/homeobox protein Lhx4

      UniProtKB/TrEMBL
      A0A218V538
      Related
      ENSLSDP00000015545.1, ENSLSDT00000017647.1
      Conserved Domains (2) summary
      cd09376
      Location:55 → 110
      LIM2_Lhx3_Lhx4; The second LIM domain of Lhx3-Lhx4 family
      pfam00046
      Location:126 → 179
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.