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    LOC110670531 bZIP transcription factor 16 [ Hevea brasiliensis (rubber tree) ]

    Gene ID: 110670531, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC110670531
    Gene description
    bZIP transcription factor 16
    Locus tag
    P3X46_032334
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hevea brasiliensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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    Genomic context

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    See LOC110670531 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 18 NC_079510.1 (25667649..25681427)
    100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018745712.1 (3358626..3372763)

    Chromosome 18 - NC_079510.1Genomic Context describing neighboring genes Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene probable manganese-transporting ATPase PDR2 Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene spindle assembly checkpoint component MAD1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft genome sequence of the rubber tree Hevea brasiliensis. Rahman AY, et al. BMC Genomics, 2013 Feb 2. PMID 23375136, Free PMC Article
    2. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. Li D, et al. Sci Rep, 2016 Apr 25. PMID 27108962, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3005281v1 Primary Assembly

    Genomic

    1. NC_079510.1 Reference ASM3005281v1 Primary Assembly

      Range
      25667649..25681427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058140427.1 → XP_057996410.1  bZIP transcription factor 16 isoform X2

      UniProtKB/TrEMBL
      A0A6A6M8H4

    2. XM_021832615.2 → XP_021688307.1  bZIP transcription factor 16 isoform X1

      UniProtKB/TrEMBL
      A0A6A6M8H4
      Conserved Domains (4) summary
      smart00338
      Location:306 → 370
      BRLZ; basic region leucin zipper
      cd14702
      Location:311 → 361
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 97
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:136 → 273
      MFMR_assoc; Disordered region downstream of MFMR

    3. XM_021832624.2 → XP_021688316.1  bZIP transcription factor 16 isoform X1

      UniProtKB/TrEMBL
      A0A6A6M8H4
      Conserved Domains (4) summary
      smart00338
      Location:306 → 370
      BRLZ; basic region leucin zipper
      cd14702
      Location:311 → 361
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 97
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:136 → 273
      MFMR_assoc; Disordered region downstream of MFMR
    Nucleotide Protein
    Heading Accession and Version

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