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    LOC110818062 protein NLP4-like [ Carica papaya (papaya) ]

    Gene ID: 110818062, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC110818062
    Gene description
    protein NLP4-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carica papaya
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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    Genomic context

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    See LOC110818062 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Papaya1.0 (GCF_000150535.2) Unplaced Scaffold NW_019014666.1 (1358191..1365938, complement)

    NW_019014666.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene Niemann-Pick C1 protein-like Neighboring gene catalase isozyme 1 Neighboring gene U-box domain-containing protein 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019014666 Unplaced Scaffold Reference Papaya1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NLP4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carica papaya Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Papaya1.0 Primary Assembly

    Genomic

    1. NW_019014666.1 Reference Papaya1.0 Primary Assembly

      Range
      1358191..1365938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022046814.1 → XP_021902506.1  protein NLP4-like

      Conserved Domains (2) summary
      cd06407
      Location:843 → 922
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:619 → 667
      RWP-RK; RWP-RK domain

    2. XM_022046813.1 → XP_021902505.1  protein NLP4-like

      Conserved Domains (2) summary
      cd06407
      Location:843 → 922
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:619 → 667
      RWP-RK; RWP-RK domain

    3. XM_022046812.1 → XP_021902504.1  protein NLP4-like

      Conserved Domains (2) summary
      cd06407
      Location:843 → 922
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:619 → 667
      RWP-RK; RWP-RK domain

    4. XM_022046810.1 → XP_021902502.1  protein NLP4-like

      Conserved Domains (2) summary
      cd06407
      Location:843 → 922
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:619 → 667
      RWP-RK; RWP-RK domain

    5. XM_022046811.1 → XP_021902503.1  protein NLP4-like

      Conserved Domains (2) summary
      cd06407
      Location:843 → 922
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:619 → 667
      RWP-RK; RWP-RK domain
    Nucleotide Protein
    Heading Accession and Version

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