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    LOC111118145 nucleoside diphosphate kinase homolog 5-like [ Crassostrea virginica (eastern oyster) ]

    Gene ID: 111118145, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111118145
    Gene description
    nucleoside diphosphate kinase homolog 5-like
    See related
    EnsemblRapid:LOC111118145
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Crassostrea virginica
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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    Genomic context

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    See LOC111118145 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current C_virginica-3.0 (GCF_002022765.2) 2 NC_035781.1 (33340553..33342043, complement)

    Chromosome 2 - NC_035781.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L34-like Neighboring gene vesicle transport through interaction with t-SNAREs homolog 1A-like Neighboring gene metalloreductase STEAP4-like Neighboring gene fas-binding factor 1-like Neighboring gene sphingosine kinase 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_035781.1 Chromosome 2 Reference C_virginica-3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleoside diphosphate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in GTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in UTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatid differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoside diphosphate kinase homolog 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C_virginica-3.0 Primary Assembly

    Genomic

    1. NC_035781.1 Reference C_virginica-3.0 Primary Assembly

      Range
      33340553..33342043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022457466.1 → XP_022313174.1  nucleoside diphosphate kinase homolog 5-like

      UniProtKB/TrEMBL
      A0A8B8CDD3
      Related
      XP_022313174.1, XM_022457466.1
      Conserved Domains (2) summary
      cd04418
      Location:16 → 147
      NDPk5; Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, ...
      pfam05186
      Location:159 → 200
      Dpy-30; Dpy-30 motif
    Nucleotide Protein
    Heading Accession and Version

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