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    Spt3 Transcription initiation protein Spt3 [ Varroa destructor (honeybee mite) ]

    Gene ID: 111255409, updated on 3-Jul-2024

    Summary

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    Gene symbol
    Spt3
    Gene description
    Transcription initiation protein Spt3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varroa destructor
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
    Orthologs
    fruit fly all
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    Genomic context

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    See Spt3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211454.1 (59322686..59349798)

    NW_019211454.1Genomic Context describing neighboring genes Neighboring gene target of rapamycin complex 2 subunit MAPKAP1-like Neighboring gene putative defense protein 1 Neighboring gene cell division cycle 7-related protein kinase-like Neighboring gene glutamine synthetase 2 cytoplasmic-like Neighboring gene TBC1 domain family member 23 Neighboring gene tRNA (cytosine(34)-C(5))-methyltransferase Nsun2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019211454 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAGA complex subunit spt3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vdes_3.0 Primary Assembly

    Genomic

    1. NW_019211454.1 Reference Vdes_3.0 Primary Assembly

      Range
      59322686..59349798
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022817366.1 → XP_022673101.1  SAGA complex subunit spt3-like isoform X1

      UniProtKB/TrEMBL
      A0A7M7L7U7
      Conserved Domains (1) summary
      cl02174
      Location:45 → 118
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    2. XM_022817370.1 → XP_022673105.1  SAGA complex subunit spt3-like isoform X3

      UniProtKB/TrEMBL
      A0A7M7KZW7
      Conserved Domains (1) summary
      cl02174
      Location:45 → 75
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    3. XM_022817369.1 → XP_022673104.1  SAGA complex subunit spt3-like isoform X2

      UniProtKB/TrEMBL
      A0A7M7KZ96
      Conserved Domains (1) summary
      cl02174
      Location:41 → 114
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    4. XM_022817367.1 → XP_022673102.1  SAGA complex subunit spt3-like isoform X1

      UniProtKB/TrEMBL
      A0A7M7L7U7
      Conserved Domains (1) summary
      cl02174
      Location:45 → 118
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    Nucleotide Protein
    Heading Accession and Version

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