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    LOC111260794 brain tumor protein-like [ Varroa jacobsoni ]

    Gene ID: 111260794, updated on 1-Jul-2024

    Summary

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    Gene symbol
    LOC111260794
    Gene description
    brain tumor protein-like
    See related
    EnsemblRapid:LOC111260794
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varroa jacobsoni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC111260794 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current vjacob_1.0 (GCF_002532875.1) Unplaced Scaffold NW_019213381.1 (57112..119532, complement)

    NW_019213381.1Genomic Context describing neighboring genes Neighboring gene serine proteinase stubble Neighboring gene uncharacterized LOC111260806 Neighboring gene uncharacterized LOC111260793 Neighboring gene M-phase inducer phosphatase 1-like Neighboring gene clathrin light chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019213381 Unplaced Scaffold Reference vjacob_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    brain tumor protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Varroa jacobsoni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference vjacob_1.0

    Genomic

    1. NW_019213381.1 Reference vjacob_1.0

      Range
      57112..119532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022833796.1 → XP_022689531.1  brain tumor protein-like isoform X2

      Related
      XP_022689531.1, XM_022833796.1
      Conserved Domains (4) summary
      cd14959
      Location:701 → 970
      NHL_brat_like; NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins
      pfam00643
      Location:252 → 280
      zf-B_box; B-box zinc finger
      cl17238
      Location:106 → 152
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25407
      Location:297 → 421
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    2. XM_022833797.1 → XP_022689532.1  brain tumor protein-like isoform X2

      Related
      XP_022689532.1, XM_022833797.1
      Conserved Domains (4) summary
      cd14959
      Location:701 → 970
      NHL_brat_like; NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins
      pfam00643
      Location:252 → 280
      zf-B_box; B-box zinc finger
      cl17238
      Location:106 → 152
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25407
      Location:297 → 421
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    3. XM_022833798.1 → XP_022689533.1  brain tumor protein-like isoform X2

      Related
      XP_022689533.1, XM_022833798.1
      Conserved Domains (4) summary
      cd14959
      Location:701 → 970
      NHL_brat_like; NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins
      pfam00643
      Location:252 → 280
      zf-B_box; B-box zinc finger
      cl17238
      Location:106 → 152
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25407
      Location:297 → 421
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    4. XM_022833799.1 → XP_022689534.1  brain tumor protein-like isoform X3

      Related
      XP_022689534.1, XM_022833799.1
      Conserved Domains (4) summary
      cd14959
      Location:690 → 959
      NHL_brat_like; NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins
      pfam00643
      Location:241 → 269
      zf-B_box; B-box zinc finger
      cl17238
      Location:95 → 141
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25407
      Location:286 → 410
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    5. XM_022833795.1 → XP_022689530.1  brain tumor protein-like isoform X1

      Related
      XP_022689530.1, XM_022833795.1
      Conserved Domains (4) summary
      cd14959
      Location:743 → 1012
      NHL_brat_like; NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins
      pfam00643
      Location:294 → 322
      zf-B_box; B-box zinc finger
      cl17238
      Location:148 → 194
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl25407
      Location:339 → 463
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
    Nucleotide Protein
    Heading Accession and Version

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