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    OCT59_005680 uncharacterized protein [ Rhizophagus irregularis ]

    Gene ID: 36884310, updated on 10-Jul-2024

    Summary

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    Gene symbol
    OCT59_005680
    Gene description
    uncharacterized protein
    Locus tag
    OCT59_005680
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rhizophagus irregularis (isolate: DAOM-197198)
    Lineage
    Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus
    Old locus tag
    GLOIN_2v76828
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    Genomic context

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    See OCT59_005680 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    15
    Sequence:
    Chromosome: 13; NC_089441.1 (4947627..4951870)

    Chromosome 13 - NC_089441.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene GTP-binding protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_089441.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_089441.1 Reference assembly

      Range
      4947627..4951870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025334012.2 → XP_025178042.1  uncharacterized protein OCT59_005680 [Rhizophagus irregularis]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A015LXQ7, A0A2I1FVZ7, A0A2P4Q0N4, A0A915YRD6
      Conserved Domains (1) summary
      COG5021
      Location:1 → 800
      HUL4; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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