U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOXL3 lysyl oxidase like 3 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 459340, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LOXL3provided by VGNC
    Official Full Name
    lysyl oxidase like 3provided by VGNC
    Primary source
    VGNC:VGNC:290
    Locus tag
    CK820_G0035696
    See related
    Ensembl:ENSPTRG00000012099
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOXL3 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 12 NC_072410.2 (48199015..48221657)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2A NC_072399.1 (74631573..74654136, complement)

    Chromosome 12 - NC_072410.2Genomic Context describing neighboring genes Neighboring gene meiosis 1 associated protein Neighboring gene torsin-1B-like Neighboring gene methylglutaconyl-CoA hydratase, mitochondrial-like Neighboring gene docking protein 1 Neighboring gene HtrA serine peptidase 2 Neighboring gene AUP1 lipid droplet regulating VLDL assembly factor Neighboring gene DEAQ-box RNA dependent ATPase 1 Neighboring gene T cell leukemia homeobox 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-lysine 6-oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen fibril organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-lysine oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    lysyl oxidase homolog 3
    XP_001161542.1
    XP_063645768.1
    XP_063645769.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072410.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      48199015..48221657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001161542.8 → XP_001161542.1  lysyl oxidase homolog 3 isoform X1

      See identical proteins and their annotated locations for XP_001161542.1

      UniProtKB/TrEMBL
      A0A2I3SAT0, A0A2J8KV41, A0A2J8KV50, A0A6D2X4J6, A0A6D2Y837, H2R8R6
      Related
      ENSPTRP00000051888.2
      Conserved Domains (2) summary
      smart00202
      Location:307 → 407
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:530 → 728
      Lysyl_oxidase; Lysyl oxidase

    2. XM_063789698.1 → XP_063645768.1  lysyl oxidase homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SAT0, A0A2J8KV41, A0A2J8KV50, A0A6D2X4J6, A0A6D2Y837, H2R8R6

    3. XM_063789699.1 → XP_063645769.1  lysyl oxidase homolog 3 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials