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    FAF1 Fas associated factor 1 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100459454, updated on 3-Dec-2024

    Summary

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    Gene symbol
    FAF1
    Gene description
    Fas associated factor 1
    Locus tag
    CR201_G0020941
    See related
    Ensembl:ENSPPYG00000029417
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    See FAF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 1 NC_071985.2 (182300825..182835036)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 1 NC_071985.1 (182307723..182841944)

    Chromosome 1 - NC_071985.2Genomic Context describing neighboring genes Neighboring gene cofilin-1-like Neighboring gene chromosome 1 C1orf185 homolog Neighboring gene cyclin dependent kinase inhibitor 2C Neighboring gene protein SET-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC129050937 Neighboring gene uncharacterized LOC129050936 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene DMRT like family A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NF-kappaB binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAS-associated factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      182300825..182835036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002810838.5 → XP_002810884.1  FAS-associated factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8V8G4, A0A2J8V8I1, A0A663DJ70, K7EVY0
      Related
      ENSPPYP00000024718.1
      Conserved Domains (4) summary
      cd01771
      Location:570 → 649
      Faf1_UBX; Faf1 UBX domain
      cd02990
      Location:352 → 487
      UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
      cd14413
      Location:14 → 46
      UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
      pfam09731
      Location:490 → 595
      Mitofilin; Mitochondrial inner membrane protein

    2. XM_063712405.1 → XP_063568475.1  FAS-associated factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A2J8V8H5
    Nucleotide Protein
    Heading Accession and Version

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