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    LOC17889940 cyclin-D2-1 [ Capsella rubella ]

    Gene ID: 17889940, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC17889940
    Gene description
    cyclin-D2-1
    Locus tag
    CARUB_v10023525mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17889940 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (624537..626804, complement)

    NW_006238920.1Genomic Context describing neighboring genes Neighboring gene classical arabinogalactan protein 2 Neighboring gene ATP-dependent 6-phosphofructokinase 5, chloroplastic Neighboring gene small nucleolar RNA snoR128 Neighboring gene small nucleolar RNA snoR128

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238920 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic cell cycle phase transition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin-dependent protein kinase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-D2-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238920.1 Reference Caprub1_0

      Range
      624537..626804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023784896.1 → XP_023640664.1  cyclin-D2-1 isoform X1

    2. XM_006294434.2 → XP_006294496.1  cyclin-D2-1 isoform X2

      See identical proteins and their annotated locations for XP_006294496.1

      UniProtKB/TrEMBL
      R0HCZ1
      Conserved Domains (1) summary
      pfam00134
      Location:63 → 194
      Cyclin_N; Cyclin, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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