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    nup58 nucleoporin 58 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101165014, updated on 8-Mar-2024

    Summary

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    Gene symbol
    nup58
    Gene description
    nucleoporin 58
    See related
    EnsemblRapid:ENSORLG00000006885
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
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    Genomic context

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    See nup58 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 20 NC_019878.2 (13562828..13573946, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 20 NC_019878.1 (11627247..11633626, complement)

    Chromosome 20 - NC_019878.2Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 33ba Neighboring gene rhophilin associated tail protein 1-like Neighboring gene myotubularin related protein 6 Neighboring gene APC membrane recruitment protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleocytoplasmic transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoporin p58/p45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019878.2 Reference ASM223467v1 Primary Assembly

      Range
      13562828..13573946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023950124.1 → XP_023805892.1  nucleoporin p58/p45 isoform X1

      UniProtKB/TrEMBL
      A0A3P9LQG0, H2LRF0
      Related
      ENSORLP00000008649.2, ENSORLT00000008650.3
      Conserved Domains (1) summary
      pfam15967
      Location:2 → 598
      Nucleoporin_FG2; Nucleoporin FG repeated region

    2. XM_023950125.1 → XP_023805893.1  nucleoporin p58/p45 isoform X2

      UniProtKB/TrEMBL
      A0A3P9JQ42
      Related
      ENSORLP00000050007.1, ENSORLT00000097786.1
      Conserved Domains (1) summary
      pfam15967
      Location:2 → 570
      Nucleoporin_FG2; Nucleoporin FG repeated region
    Nucleotide Protein
    Heading Accession and Version

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