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    U40 U40 [ Human betaherpesvirus 6A ]

    Gene ID: 1487918, updated on 18-Aug-2023

    Summary

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    Gene symbol
    U40
    Gene description
    U40
    Locus tag
    HHV6gp39
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Human betaherpesvirus 6A (isolate: U1102, nat-host: Homo sapiens)
    Lineage
    Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Betaherpesvirinae; Roseolovirus
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    Genomic context

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    Sequence:
    NC_001664.4 (62083..64263, complement)

    NC_001664.4Genomic Context describing neighboring genes Neighboring gene U37 Neighboring gene DNA polymerase catalytic subunit Neighboring gene glycoprotein B Neighboring gene major DNA binding protein Neighboring gene transactivator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001664.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Human herpesvirus-6 glycoprotein H and L homologs are components of the gp100 complex and the gH external domain is the target for neutralizing monoclonal antibodies. Liu DX, et al. Virology, 1993 Nov. PMID 7692666
    2. Identification and characterization of a human herpesvirus 6 gene segment that trans activates the human immunodeficiency virus type 1 promoter. Geng YQ, et al. J Virol, 1992 Mar. PMID 1310766, Free PMC Article
    3. The right end of the unique region of the genome of human herpesvirus 6 U1102 contains a candidate immediate early gene enhancer and a homologue of the human cytomegalovirus US22 gene family. Thomson BJ, et al. J Gen Virol, 1992 Jul. PMID 1321205
    4. Identification of homologues to the human cytomegalovirus US22 gene family in human herpesvirus 6. Efstathiou S, et al. J Gen Virol, 1992 Jul. PMID 1321206
    5. Infectivity determinants encoded in a conserved gene block of human herpesvirus-6. Gompels UA, et al. DNA Seq, 1992. PMID 1333836

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    U40
    NP_042933.2
    • transport/capsid assembly protein; similar to HHV-5 UL56, HVS GENE 7, EBV BALF3, EHV1 32, VZV 30, HSV1 UL28

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001664.4 Reference assembly

      Range
      62083..64263 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_042933.2 U40 [Human betaherpesvirus 6A]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P52384
      UniProtKB/TrEMBL
      A0A0A7RLY6, Q69068
      Conserved Domains (1) summary
      pfam01366
      Location:4 → 612
      PRTP; Herpesvirus processing and transport protein
    Nucleotide Protein
    Heading Accession and Version

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