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    LOC112288099 acyl-coenzyme A oxidase 4, peroxisomal-like [ Physcomitrium patens ]

    Gene ID: 112288099, updated on 20-Sep-2024

    Summary

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    Gene symbol
    LOC112288099
    Gene description
    acyl-coenzyme A oxidase 4, peroxisomal-like
    Locus tag
    PHYPA_013241
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physcomitrium patens
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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    Genomic context

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    See LOC112288099 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Phypa V3 (GCF_000002425.4) 10 NC_037262.1 (809587..814782, complement)

    Chromosome 10 - NC_037262.1Genomic Context describing neighboring genes Neighboring gene alcohol dehydrogenase-like Neighboring gene uncharacterized LOC112287888 Neighboring gene eukaryotic translation initiation factor 3 subunit A-like Neighboring gene 40S ribosomal protein S10-1-like Neighboring gene metal tolerance protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037262.1 Chromosome 10 Reference Phypa V3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyl-CoA dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acyl-coenzyme A oxidase 4, peroxisomal-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Phypa V3 Primary Assembly

    Genomic

    1. NC_037262.1 Reference Phypa V3 Primary Assembly

      Range
      809587..814782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024531954.1 → XP_024387722.1  acyl-coenzyme A oxidase 4, peroxisomal-like isoform X3

      UniProtKB/TrEMBL
      A0A7I4A4K9, A0A7I4EZU0
      Conserved Domains (1) summary
      PLN02526
      Location:90 → 498
      PLN02526; acyl-coenzyme A oxidase

    2. XM_024531951.1 → XP_024387719.1  acyl-coenzyme A oxidase 4, peroxisomal-like isoform X1

      UniProtKB/TrEMBL
      A0A7I4A4K9, A0A7I4AB06
      Conserved Domains (1) summary
      PLN02526
      Location:101 → 509
      PLN02526; acyl-coenzyme A oxidase

    3. XM_024531953.1 → XP_024387721.1  acyl-coenzyme A oxidase 4, peroxisomal-like isoform X2

      UniProtKB/TrEMBL
      A0A7I4A4K9
      Conserved Domains (1) summary
      PLN02526
      Location:91 → 499
      PLN02526; acyl-coenzyme A oxidase

    4. XM_024531955.1 → XP_024387723.1  acyl-coenzyme A oxidase 4, peroxisomal-like isoform X4

      UniProtKB/TrEMBL
      A0A2K1JX62, A0A7I4A4K9
      Conserved Domains (1) summary
      PLN02526
      Location:53 → 461
      PLN02526; acyl-coenzyme A oxidase
    Nucleotide Protein
    Heading Accession and Version

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