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    LOC9660851 chalcone synthase 1B [ Selaginella moellendorffii ]

    Gene ID: 9660851, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9660851
    Gene description
    chalcone synthase 1B
    Locus tag
    SELMODRAFT_233950
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9660851 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314314.1 (464050..465445, complement)

    NW_003314314.1Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 34 Neighboring gene aldo-keto reductase family 4 member C10 Neighboring gene alpha-glucan water dikinase 1, chloroplastic Neighboring gene 40S ribosomal protein S5 Neighboring gene ruBisCO large subunit-binding protein subunit beta, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314314 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polyketide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chalcone synthase 1B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314314.1 Reference v1.0

      Range
      464050..465445 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002982311.2 → XP_002982357.2  chalcone synthase 1B

      UniProtKB/TrEMBL
      D8SG16
      Conserved Domains (1) summary
      cd00831
      Location:34 → 398
      CHS_like; Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, ...
    Nucleotide Protein
    Heading Accession and Version

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