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    LOC112574275 microtubule-actin cross-linking factor 1-like [ Pomacea canaliculata ]

    Gene ID: 112574275, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112574275
    Gene description
    microtubule-actin cross-linking factor 1-like
    Locus tag
    C0Q70_16043
    See related
    EnsemblRapid:LOC112574275
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pomacea canaliculata
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Architaenioglossa; Ampullarioidea; Ampullariidae; Pomacea
    NEW
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    Genomic context

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    See LOC112574275 in Genome Data Viewer
    Location:
    chromosome: LG10
    Exon count:
    97
    Annotation release Status Assembly LG Location
    100 current ASM307304v1 (GCF_003073045.1) LG10 NC_037599.1 (2918142..3072802)

    Linkage Group LG10 - NC_037599.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel protein Shaw-like Neighboring gene nuclear inhibitor of protein phosphatase 1-like Neighboring gene tyrosine-protein kinase SYK-like Neighboring gene nuclear factor 1 X-type-like Neighboring gene transfer RNA leucine (anticodon CAA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037599.1 Chromosome LG10 Reference ASM307304v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wound healing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    microtubule-actin cross-linking factor 1-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Pomacea canaliculata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM307304v1 Primary Assembly

    Genomic

    1. NC_037599.1 Reference ASM307304v1 Primary Assembly

      Range
      2918142..3072802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025255231.1 → XP_025111016.1  microtubule-actin cross-linking factor 1-like isoform X3

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111016.1, XM_025255231.1
      Conserved Domains (7) summary
      smart00250
      Location:2210 → 2239
      PLEC; Plectin repeat
      COG5069
      Location:36 → 319
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10179 → 10389
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10618 → 10673
      Spectrin; Spectrin repeat
      pfam02187
      Location:10888 → 10955
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10826 → 10874
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7430 → 8110
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_025255229.1 → XP_025111014.1  microtubule-actin cross-linking factor 1-like isoform X3

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111014.1, XM_025255229.1
      Conserved Domains (7) summary
      smart00250
      Location:2210 → 2239
      PLEC; Plectin repeat
      COG5069
      Location:36 → 319
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10179 → 10389
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10618 → 10673
      Spectrin; Spectrin repeat
      pfam02187
      Location:10888 → 10955
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10826 → 10874
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7430 → 8110
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_025255233.1 → XP_025111018.1  microtubule-actin cross-linking factor 1-like isoform X5

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111018.1, XM_025255233.1
      Conserved Domains (7) summary
      smart00250
      Location:2200 → 2229
      PLEC; Plectin repeat
      COG5069
      Location:36 → 309
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10169 → 10379
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10608 → 10663
      Spectrin; Spectrin repeat
      pfam02187
      Location:10878 → 10945
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10816 → 10864
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7420 → 8100
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_025255235.1 → XP_025111020.1  microtubule-actin cross-linking factor 1-like isoform X7

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111020.1, XM_025255235.1
      Conserved Domains (7) summary
      smart00250
      Location:2194 → 2223
      PLEC; Plectin repeat
      COG5069
      Location:36 → 303
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10163 → 10373
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10602 → 10657
      Spectrin; Spectrin repeat
      pfam02187
      Location:10872 → 10939
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10810 → 10858
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7414 → 8094
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_025255242.1 → XP_025111027.1  microtubule-actin cross-linking factor 1-like isoform X14

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111027.1, XM_025255242.1
      Conserved Domains (7) summary
      smart00250
      Location:2210 → 2239
      PLEC; Plectin repeat
      COG5069
      Location:36 → 319
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10179 → 10389
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10618 → 10673
      Spectrin; Spectrin repeat
      pfam02187
      Location:10888 → 10956
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10826 → 10874
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7430 → 8110
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_025255230.1 → XP_025111015.1  microtubule-actin cross-linking factor 1-like isoform X3

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111015.1, XM_025255230.1
      Conserved Domains (7) summary
      smart00250
      Location:2210 → 2239
      PLEC; Plectin repeat
      COG5069
      Location:36 → 319
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10179 → 10389
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10618 → 10673
      Spectrin; Spectrin repeat
      pfam02187
      Location:10888 → 10955
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10826 → 10874
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7430 → 8110
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_025255232.1 → XP_025111017.1  microtubule-actin cross-linking factor 1-like isoform X4

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111017.1, XM_025255232.1
      Conserved Domains (7) summary
      smart00250
      Location:2204 → 2233
      PLEC; Plectin repeat
      COG5069
      Location:36 → 313
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10173 → 10383
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10612 → 10667
      Spectrin; Spectrin repeat
      pfam02187
      Location:10882 → 10949
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10820 → 10868
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7424 → 8104
      SMC_N; RecF/RecN/SMC N terminal domain

    8. XM_025255237.1 → XP_025111022.1  microtubule-actin cross-linking factor 1-like isoform X9

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111022.1, XM_025255237.1
      Conserved Domains (7) summary
      smart00250
      Location:2188 → 2217
      PLEC; Plectin repeat
      COG5069
      Location:36 → 297
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:10157 → 10367
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00435
      Location:10596 → 10651
      Spectrin; Spectrin repeat
      pfam02187
      Location:10866 → 10933
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10804 → 10852
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7408 → 8088
      SMC_N; RecF/RecN/SMC N terminal domain

    9. XM_025255240.1 → XP_025111025.1  microtubule-actin cross-linking factor 1-like isoform X12

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111025.1, XM_025255240.1
      Conserved Domains (7) summary
      smart00250
      Location:2086 → 2115
      PLEC; Plectin repeat
      cd00176
      Location:10055 → 10265
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:49 → 153
      CH; Calponin homology (CH) domain
      pfam00435
      Location:10494 → 10549
      Spectrin; Spectrin repeat
      pfam02187
      Location:10764 → 10831
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10702 → 10750
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7306 → 7986
      SMC_N; RecF/RecN/SMC N terminal domain

    10. XM_025255226.1 → XP_025111011.1  microtubule-actin cross-linking factor 1-like isoform X1

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111011.1, XM_025255226.1
      Conserved Domains (7) summary
      smart00250
      Location:2215 → 2244
      PLEC; Plectin repeat
      cd00176
      Location:10184 → 10394
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:178 → 282
      CH; Calponin homology (CH) domain
      pfam00435
      Location:10623 → 10678
      Spectrin; Spectrin repeat
      pfam02187
      Location:10893 → 10960
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10831 → 10879
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7435 → 8115
      SMC_N; RecF/RecN/SMC N terminal domain

    11. XM_025255234.1 → XP_025111019.1  microtubule-actin cross-linking factor 1-like isoform X6

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111019.1, XM_025255234.1
      Conserved Domains (7) summary
      smart00250
      Location:2215 → 2244
      PLEC; Plectin repeat
      cd00176
      Location:10184 → 10394
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:178 → 282
      CH; Calponin homology (CH) domain
      pfam00435
      Location:10623 → 10678
      Spectrin; Spectrin repeat
      pfam02187
      Location:10893 → 10960
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10831 → 10879
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7435 → 8115
      SMC_N; RecF/RecN/SMC N terminal domain

    12. XM_025255238.1 → XP_025111023.1  microtubule-actin cross-linking factor 1-like isoform X10

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111023.1, XM_025255238.1
      Conserved Domains (7) summary
      smart00250
      Location:2215 → 2244
      PLEC; Plectin repeat
      cd00176
      Location:10132 → 10342
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:178 → 282
      CH; Calponin homology (CH) domain
      pfam00435
      Location:10571 → 10626
      Spectrin; Spectrin repeat
      pfam02187
      Location:10841 → 10908
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10779 → 10827
      EF-hand_7; EF-hand domain pair
      cl02488
      Location:7482 → 7633
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    13. XM_025255227.1 → XP_025111012.1  microtubule-actin cross-linking factor 1-like isoform X2

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111012.1, XM_025255227.1
      Conserved Domains (7) summary
      smart00250
      Location:2215 → 2244
      PLEC; Plectin repeat
      cd00176
      Location:10184 → 10394
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:178 → 282
      CH; Calponin homology (CH) domain
      pfam00435
      Location:10623 → 10678
      Spectrin; Spectrin repeat
      pfam02187
      Location:10893 → 10961
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10831 → 10879
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7435 → 8115
      SMC_N; RecF/RecN/SMC N terminal domain

    14. XM_025255236.1 → XP_025111021.1  microtubule-actin cross-linking factor 1-like isoform X8

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111021.1, XM_025255236.1
      Conserved Domains (7) summary
      smart00250
      Location:2215 → 2244
      PLEC; Plectin repeat
      cd00176
      Location:10184 → 10394
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:178 → 282
      CH; Calponin homology (CH) domain
      pfam00435
      Location:10623 → 10678
      Spectrin; Spectrin repeat
      pfam02187
      Location:10893 → 10961
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10831 → 10879
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7435 → 8115
      SMC_N; RecF/RecN/SMC N terminal domain

    15. XM_025255241.1 → XP_025111026.1  microtubule-actin cross-linking factor 1-like isoform X13

      Related
      XP_025111026.1, XM_025255241.1
      Conserved Domains (8) summary
      smart00250
      Location:2215 → 2244
      PLEC; Plectin repeat
      cd00176
      Location:7699 → 7909
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:178 → 282
      CH; Calponin homology (CH) domain
      pfam00435
      Location:8138 → 8193
      Spectrin; Spectrin repeat
      pfam02187
      Location:8408 → 8475
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:8346 → 8394
      EF-hand_7; EF-hand domain pair
      cl02488
      Location:1111 → 1302
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl25732
      Location:4974 → 5631
      SMC_N; RecF/RecN/SMC N terminal domain

    16. XM_025255239.1 → XP_025111024.1  microtubule-actin cross-linking factor 1-like isoform X11

      UniProtKB/TrEMBL
      A0A2T7NNN5
      Related
      XP_025111024.1, XM_025255239.1
      Conserved Domains (7) summary
      smart00250
      Location:2090 → 2119
      PLEC; Plectin repeat
      cd00176
      Location:10059 → 10269
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00307
      Location:53 → 157
      CH; Calponin homology (CH) domain
      pfam00435
      Location:10498 → 10553
      Spectrin; Spectrin repeat
      pfam02187
      Location:10768 → 10835
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      pfam13499
      Location:10706 → 10754
      EF-hand_7; EF-hand domain pair
      cl25732
      Location:7310 → 7990
      SMC_N; RecF/RecN/SMC N terminal domain

    RNA

    1. XR_003101401.1 RNA Sequence

      Related
      XR_003101401.1
    Nucleotide Protein
    Heading Accession and Version

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