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    LOC112562577 putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2 [ Pomacea canaliculata ]

    Gene ID: 112562577, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112562577
    Gene description
    putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2
    Locus tag
    C0Q70_08601
    See related
    EnsemblRapid:LOC112562577
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pomacea canaliculata
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Architaenioglossa; Ampullarioidea; Ampullariidae; Pomacea
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    Genomic context

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    See LOC112562577 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    18
    Annotation release Status Assembly LG Location
    100 current ASM307304v1 (GCF_003073045.1) LG4 NC_037593.1 (34534052..34560934, complement)

    Linkage Group LG4 - NC_037593.1Genomic Context describing neighboring genes Neighboring gene MAP kinase-activated protein kinase 5-like Neighboring gene protein ABHD15-like Neighboring gene uncharacterized LOC112562046 Neighboring gene tankyrase-1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037593.1 Chromosome LG4 Reference ASM307304v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerophosphocholine phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pomacea canaliculata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM307304v1 Primary Assembly

    Genomic

    1. NC_037593.1 Reference ASM307304v1 Primary Assembly

      Range
      34534052..34560934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025235891.1 → XP_025091676.1  putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2

      UniProtKB/TrEMBL
      A0A2T7PIA9
      Related
      XP_025091676.1, XM_025235891.1
      Conserved Domains (2) summary
      cl14615
      Location:368 → 654
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
      cl15347
      Location:54 → 177
      CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...
    Nucleotide Protein
    Heading Accession and Version

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