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    RNFT2 ring finger protein, transmembrane 2 [ Alligator sinensis (Chinese alligator) ]

    Gene ID: 102382698, updated on 10-Mar-2024

    Summary

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    Gene symbol
    RNFT2
    Gene description
    ring finger protein, transmembrane 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See RNFT2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841868.1 (182449..236870, complement)

    NW_005841868.1Genomic Context describing neighboring genes Neighboring gene tescalcin Neighboring gene F-box and WD repeat domain containing 8 Neighboring gene SREBF pathway regulator in golgi 1 Neighboring gene mediator complex subunit 13L

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005841868 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of ERAD pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING finger and transmembrane domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM45574v1 Primary Assembly

    Genomic

    1. NW_005841868.1 Reference ASM45574v1 Primary Assembly

      Range
      182449..236870 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025192982.1 → XP_025048767.1  RING finger and transmembrane domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q0FN74

    2. XM_025192974.1 → XP_025048759.1  RING finger and transmembrane domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q0FN74

    3. XM_025192998.1 → XP_025048783.1  RING finger and transmembrane domain-containing protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A3Q0FSW0

    4. XM_025192979.1 → XP_025048764.1  RING finger and transmembrane domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q0FN74

    5. XM_025192969.1 → XP_025048754.1  RING finger and transmembrane domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q0FN74

    6. XM_014526237.2 → XP_014381723.1  RING finger and transmembrane domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1U7R3V4
      Conserved Domains (1) summary
      cd16742
      Location:403 → 443
      RING-HC_RNFT2; RING finger, HC subclass, found in RING finger and transmembrane domain-containing protein 2(RNFT2)

    7. XM_025192949.1 → XP_025048734.1  RING finger and transmembrane domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1U7R3V4
      Conserved Domains (1) summary
      cd16742
      Location:403 → 443
      RING-HC_RNFT2; RING finger, HC subclass, found in RING finger and transmembrane domain-containing protein 2(RNFT2)

    8. XM_025192964.1 → XP_025048749.1  RING finger and transmembrane domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q0FN57
      Conserved Domains (1) summary
      cd16742
      Location:402 → 442
      RING-HC_RNFT2; RING finger, HC subclass, found in RING finger and transmembrane domain-containing protein 2(RNFT2)

    9. XM_025192946.1 → XP_025048731.1  RING finger and transmembrane domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1U7R3V4
      Conserved Domains (1) summary
      cd16742
      Location:403 → 443
      RING-HC_RNFT2; RING finger, HC subclass, found in RING finger and transmembrane domain-containing protein 2(RNFT2)

    10. XM_025193010.1 → XP_025048795.1  RING finger and transmembrane domain-containing protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A3Q0FSX5

    11. XM_025192993.1 → XP_025048778.1  RING finger and transmembrane domain-containing protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A3Q0FSW0

    12. XM_025192955.1 → XP_025048740.1  RING finger and transmembrane domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1U7R3V4
      Conserved Domains (1) summary
      cd16742
      Location:403 → 443
      RING-HC_RNFT2; RING finger, HC subclass, found in RING finger and transmembrane domain-containing protein 2(RNFT2)

    13. XM_025193003.1 → XP_025048788.1  RING finger and transmembrane domain-containing protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A3Q0FSX5

    14. XM_025192988.1 → XP_025048773.1  RING finger and transmembrane domain-containing protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A3Q0FSW0
    Nucleotide Protein
    Heading Accession and Version

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